{"id":8,"date":"2011-03-10T20:57:24","date_gmt":"2011-03-10T20:57:24","guid":{"rendered":"https:\/\/onemol.org.uk\/?page_id=8"},"modified":"2015-12-14T12:10:49","modified_gmt":"2015-12-14T12:10:49","slug":"programs-page","status":"publish","type":"page","link":"https:\/\/onemol.org.uk\/?page_id=8","title":{"rendered":"Programs"},"content":{"rendered":"<p>Here are links to allow you to download and install our analysis programs.<\/p>\n<p>The brief <a href=\"https:\/\/onemol.org.uk\/?page_id=331\" title=\"DCprogs descriptions\" target=\"_blank\">descriptions of each program<\/a> on this site supersede the older descriptions on the UCL server.<\/p>\n<p><h3>Manual<\/h3>\n<\/p>\n<p><a href=\"https:\/\/onemol.org.uk\/dcprogs\/dcmanuals.pdf\" title=\"Collected manuals (pdf)\" target=\"_blank\">Download the collected manuals<\/a>. The manuals are for the DOS programs, but they explain the inputs that are needed for the Windows versions of HJCFIT etc. For Windows 7 or 8 PCs, ignore the installation instructions in the manual and proceed as below.<\/p>\n<h3>Programs on Github<\/h3>\n<p>All  downloads are now available also on Github, and it is likely that any new developments will appear there.  Here are the links.<\/p>\n<p>Main link to DCPROGS organisation on GitHub: <a href=\"https:\/\/github.com\/DCPROGS\">https:\/\/github.com\/DCPROGS<\/a> <\/p>\n<p>  General description of DCPROGS organisation: <a href=\"https:\/\/github.com\/DCPROGS\/MAIN\">https:\/\/github.com\/DCPROGS\/MAIN<\/a> <\/p>\n<p>  Compiled DOS programs: <a href=\"https:\/\/github.com\/DCPROGS\/DCDOS\">https:\/\/github.com\/DCPROGS\/DCDOS<\/a> <\/p>\n<p>  Compiled Windows programs <a href=\"https:\/\/github.com\/DCPROGS\/DCWIN\">https:\/\/github.com\/DCPROGS\/DCWIN<\/a> <\/p>\n<p>FORTRAN source code: <a href=\"https:\/\/github.com\/DCPROGS\/DCFORTRAN\">https:\/\/github.com\/DCPROGS\/DCFORTRAN<\/a><\/p>\n<h3>Windows programs<\/h3>\n<p><img decoding=\"async\" alt=\"HJCFIT icon\" src=\"hjcfit-icon.jpg\" \/> <\/p>\n<p>Some programs are written for Windows. The most important is HJCFIT, our maximum likelihood fitting program. It is the only such program that has exact missed event correction, and the only such program for which the statistical properties of the estimators have been investigated (<a href=\"https:\/\/onemol.org.uk\/?page_id=10\/#chh2003\" target=\"_blank\">Colquhoun, Hatton &#038; Hawkes, 2003<\/a>).<\/p>\n<p>To install Windows programs, <a href=\"https:\/\/onemol.org.uk\/dcprogs\/dcwinprogs.zip\" title=\"Download zip file with Windows programs\" target=\"_blank\">download dcwinprogs.zip<\/a>. Copy the contents of the sip file to a new folder on your hard disk. The folder should be named C:\\dcwinprogs   You can create a desktop short cut to the programs you want to use, e.g. HJCFIT.EXE. Autplot.exe.<\/p>\n<h3>DOS programs<\/h3>\n<p>The original programs are all written in Fortran, with GINO graphics.<\/p>\n<p>  Some programs are still DOS, especially the crucial SCAN program for idealisation of raw data. The idealisation stage is crucial and much of the reason why we get better resolution than most people is attributable to SCAN. The DOS programs run on most PCs, but to run them on a Windows 7 or Windows 8 machine, you must install DOSBOX first. The following method works on a 64 bit Windows 7 machine.<\/p>\n<ul>\n<li>Download the programs and stuff needed to run them as a <a href=\"https:\/\/onemol.org.uk\/dcprogs\/dcprogs.zip\" title=\"Download zip file with DOS programs\" target=\"_blank\"> zip file<\/a>. Copy the contents of the zip file to a new folder on your hard disk. The folder should be named C:\\dcprogs<\/li>\n<li>Download and  install DOSBOX from <a href=\"http:\/\/www.dosbox.com\/\" target=\"_blank\">http:\/\/www.dosbox.com\/<\/a> (there is a tutorial on DOSBOX <a href=\"http:\/\/ipggi.wordpress.com\/2008\/02\/17\/dosbox-beginners-newbie-and-first-timers-guide\/\" target=\"_blank\">here<\/a>)<\/li>\n<li>Run DOSBOX by clicking the desktop icon<\/li>\n<li>At the Z:\\&gt; prompt in the DOS box, type<br \/>\n<blockquote>\n<p>mount c c:\\dcprogs<\/p>\n<\/blockquote>\n<\/li>\n<li>Type C:\\ to go to the virtual disk C which is now the dcprogs folder<\/li>\n<li>at the C:\\&gt; prompt you can type HELP for a list of commands, eg type DIR to see the contents of the \\dcprogs folder.<\/li>\n<li>Type scan to run scan.exe or the name of any other .exe file in the C:\\dcprogs folder.  A new  window appears in which the program runs.  You can make it run whole screen by hitting alt-enter (repeat to exit full screen mode).<\/li>\n<li>Remember that DOS file names are restricted to 8 characters + 3 character suffix. You can use only letters and numbers in the file name, no spaces or punctuation.<\/li>\n<li>When you leave the program you get back to the C:\\&gt; prompt. Type EXIT to end the DOS emulation.<\/li>\n<\/ul>\n<h3>Instructions for installation on Mac computers<\/h3>\n<p>Both DOS and Windows programs can be run on Macs, The instructions for installation have been compiled by <a href=\"http:\/\/www.fmp-berlin.info\/research\/molecular-physiology-and-cell-biology\/research-groups\/plested\/mnb0.html\" target=\"_blank\">Andrew Plested<\/a>, who has kindly agreed to help if you have problems. <a href=\"https:\/\/onemol.org.uk\/Mac_instructions_DCProgs.pdf\" target=\"_blank\">Download the instructions<\/a> [pdf].<\/p>\n<h3>DOS source code <\/h3>\n<p>The source code for all DOS programs can be <a title=\"Source code for DOS programs\" href=\"https:\/\/www.dropbox.com\/sh\/zysyub4ktp9pzx2\/APyss8RpPO\" target=\"_blank\">downloaded from Dropbox<\/a> (not needed to run the programs).  The source code has almost 800,000 lines of code.<\/p>\n<h3>Python programs<\/h3>\n<p>Some programs have been written in Python, and further developments are planned in this language. This work has been done by Remigijus Lape and Christoph Schmidt-Hieber.<\/p>\n<p>DC-PyPs download page <a href=\"http:\/\/code.google.com\/p\/dc-pyps\/\" target=\"_blank\">http:\/\/code.google.com\/p\/dc-pyps\/<\/a><\/p>\n<p>DC_PyPs documentation ( <a href=\"http:\/\/www.stimfit.org\/qmat\/index.html\" target=\"_blank\">http:\/\/www.stimfit.org\/qmat\/index.html<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Here are links to allow you to download and install our analysis programs. The brief descriptions of each program on this site supersede the older descriptions on the UCL server. Manual Download the collected manuals. The manuals are for the &hellip; <a href=\"https:\/\/onemol.org.uk\/?page_id=8\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"open","ping_status":"open","template":"","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"jetpack_post_was_ever_published":false,"footnotes":""},"class_list":["post-8","page","type-page","status-publish","hentry"],"jetpack_shortlink":"https:\/\/wp.me\/P3xlLM-8","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/onemol.org.uk\/index.php?rest_route=\/wp\/v2\/pages\/8","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/onemol.org.uk\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/onemol.org.uk\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/onemol.org.uk\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/onemol.org.uk\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=8"}],"version-history":[{"count":25,"href":"https:\/\/onemol.org.uk\/index.php?rest_route=\/wp\/v2\/pages\/8\/revisions"}],"predecessor-version":[{"id":405,"href":"https:\/\/onemol.org.uk\/index.php?rest_route=\/wp\/v2\/pages\/8\/revisions\/405"}],"wp:attachment":[{"href":"https:\/\/onemol.org.uk\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=8"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}